1CVJ	Gene Regulation Rna	date	Aug 23, 1999
title	X-Ray Crystal Structure Of The Poly(A)-Binding Protein In Co Polyadenylate Rna
authors	R.C.Deo, J.B.Bonanno, N.Sonenberg, S.K.Burley
compound		source
Molecule: 5'-R(Apapapapapapapapapapa)-3' Chain: M, N, O, P, Q, R, S, T Engineered: Yes		Synthetic: Yes
Molecule: Polyadenylate Binding Protein 1 Chain: A, B, C, D, E, F, G, H Fragment: Residues 1-190 Synonym: Poly(A) Binding Protein 1, Pabp 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
symmetry	Space Group: P 1 21 1	R_factor 0.230 R_Free 0.304
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.557 176.797 82.489 90.00 117.67 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	A	enzyme
note	1CVJ (Molecule of the Month:pdb106)
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Recognition of polyadenylate RNA by the poly(A)-binding protein., Deo RC, Bonanno JB, Sonenberg N, Burley SK, Cell 1999 Sep 17;98(6):835-45. PMID:10499800

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk] Biological Unit Coordinates (1cvj.pdb1.gz) 33 Kb Biological Unit Coordinates (1cvj.pdb2.gz) 30 Kb Biological Unit Coordinates (1cvj.pdb3.gz) 32 Kb Biological Unit Coordinates (1cvj.pdb4.gz) 31 Kb Biological Unit Coordinates (1cvj.pdb5.gz) 33 Kb Biological Unit Coordinates (1cvj.pdb6.gz) 27 Kb Biological Unit Coordinates (1cvj.pdb7.gz) 32 Kb Biological Unit Coordinates (1cvj.pdb8.gz) 27 Kb LPC: Ligand-Protein Contacts for 1CVJ CSU: Contacts of Structural Units for 1CVJ Likely Quarternary Molecular Structure file(s) for 1CVJ Retrieve 1CVJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CVJ from S2C, [Save to disk]

View 1CVJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CVJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CVJ, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cvja1, region A:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvja2, region A:91-179 [Jmol] [rasmolscript] [script source]     - Domain d1cvjb1, region B:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvjb2, region B:91-175 [Jmol] [rasmolscript] [script source]     - Domain d1cvjc1, region C:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvjc2, region C:91-178 [Jmol] [rasmolscript] [script source]     - Domain d1cvjd1, region D:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvjd2, region D:91-175 [Jmol] [rasmolscript] [script source]     - Domain d1cvje1, region E:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvje2, region E:91-178 [Jmol] [rasmolscript] [script source]     - Domain d1cvjf1, region F:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvjf2, region F:91-173 [Jmol] [rasmolscript] [script source]     - Domain d1cvjg1, region G:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvjg2, region G:91-175 [Jmol] [rasmolscript] [script source]     - Domain d1cvjh1, region H:11-90 [Jmol] [rasmolscript] [script source]     - Domain d1cvjh2, region H:91-175 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cvj_B] [1cvj_G] [1cvj] [1cvj_T] [1cvj_F] [1cvj_C] [1cvj_O] [1cvj_P] [1cvj_N] [1cvj_D] [1cvj_H] [1cvj_R] [1cvj_A] [1cvj_S] [1cvj_E] [1cvj_M] [1cvj_Q] SWISS-PROT database: [P11940] Domain organization of [PABP1_HUMAN] by SWISSPFAM Domain found in 1CVJ: [RRM ] by SMART

Other resources with information on 1CVJ

Community annotation for 1CVJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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