1D07	Hydrolase	date	Sep 09, 1999
title	Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Pa Ut26 With 1,3-Propanediol, A Product Of Debromidation Of Dibrompropane, At 2.0a Resolution
authors	J.Marek, J.Vevodova, J.Damborsky, I.Smatanova, L.A.Svensson, J.Ne Y.Nagata, M.Takagi
compound		source
Molecule: Haloalkane Dehalogenase Chain: A Synonym: Linb, 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene Hydro Ec: 3.8.1.5 Engineered: Yes		Organism_scientific: Sphingomonas Paucimobilis Organism_taxid: 13689 Strain: Ut26 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmylb1
symmetry	Space Group: P 21 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.227 71.721 73.319 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	BR, PDO	enzyme	Hydrolase E.C.3.8.1.5 BRENDA
related structures	by homologous chain: 1IZ8
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26., Marek J, Vevodova J, Smatanova IK, Nagata Y, Svensson LA, Newman J, Takagi M, Damborsky J, Biochemistry 2000 Nov 21;39(46):14082-6. PMID:11087355

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1d07.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 1D07 CSU: Contacts of Structural Units for 1D07 Likely Quarternary Molecular Structure file(s) for 1D07 Structure Factors (190 Kb) Retrieve 1D07 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D07 from S2C, [Save to disk] Re-refined 1d07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D07 in 3D

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Visual 3D analysis of 1D07

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D07, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d07a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d07] [1d07_A] SWISS-PROT database: [P51698] Domain organization of [LINB_PSEPA] by SWISSPFAM

Other resources with information on 1D07

Community annotation for 1D07 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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