1D5R Hydrolase date Oct 11, 1999
title Crystal Structure Of The Pten Tumor Suppressor
authors J.O.Lee, H.Yang, M.M.Georgescu, A.Di Cristofano, N.P.Pavletich
compound source
Molecule: Phosphoinositide Phosphotase Pten
Chain: A
Fragment: Residues 7-353
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector: Baculovirus
Expression_system_plasmid: Pvl1393
symmetry Space Group: I 4
R_factor 0.224 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.140 113.140 58.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand TLA enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the PTEN tumor suppressor: implications for its phosphoinositide phosphatase activity and membrane association., Lee JO, Yang H, Georgescu MM, Di Cristofano A, Maehama T, Shi Y, Dixon JE, Pandolfi P, Pavletich NP, Cell 1999 Oct 29;99(3):323-34. PMID:10555148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1d5r.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1D5R
  • CSU: Contacts of Structural Units for 1D5R
  • Likely Quarternary Molecular Structure file(s) for 1D5R
  • Retrieve 1D5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5R from S2C, [Save to disk]
  • View 1D5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D5R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d5ra2, region A:14-187 [Jmol] [rasmolscript] [script source]
        - Domain d1d5ra1, region A:188-351 [Jmol] [rasmolscript] [script source]
  • Fold representative 1d5r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5r] [1d5r_A]
  • SWISS-PROT database: [P60484]
  • Domain organization of [PTEN_HUMAN] by SWISSPFAM
  • Other resources with information on 1D5R
  • Community annotation for 1D5R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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