1D7B Oxidoreductase date Oct 16, 1999
title Cytochrome Domain Of Cellobiose Dehydrogenase, Ph 7.5
authors B.M.Hallberg, T.Bergfors, K.Backbro, C.Divne
compound source
Molecule: Cellobiose Dehydrogenase
Chain: A, B
Fragment: Cytochrome Type B Domain
Synonym: Cellobiose Oxidase
Ec: 1.1.3.25
 Organism_scientific: Phanerochaete Chrysosporium
Organism_taxid: 5306
Tissue: Secreted
symmetry Space Group: P 65
R_factor 0.192 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.200 139.200 53.960 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PG, BMA, CD, HEM, NAG, PCA enzyme Oxidoreductase E.C.1.1.3.25 BRENDA
related structures by homologous chain: 1D7C
Primary referenceA new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase., Hallberg BM, Bergfors T, Backbro K, Pettersson G, Henriksson G, Divne C, Structure Fold Des 2000 Jan 15;8(1):79-88. PMID:10673428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1d7b.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1D7B
  • CSU: Contacts of Structural Units for 1D7B
  • Likely Quarternary Molecular Structure file(s) for 1D7B
  • Structure Factors (424 Kb)
  • Retrieve 1D7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D7B from S2C, [Save to disk]
  • Re-refined 1d7b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D7B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D7B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d7ba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d7bb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d7b_B] [1d7b] [1d7b_A]
  • SWISS-PROT database: [Q01738]
  • Domain organization of [CDH_PHACH] by SWISSPFAM
  • Domain found in 1D7B: [DoH ] by SMART
    • Other resources with information on 1D7B
  • Community annotation for 1D7B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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