1D7C Oxidoreductase date Oct 16, 1999
title Cytochrome Domain Of Cellobiose Dehydrogenase, Ph 4.6
authors B.M.Hallberg, T.Bergfors, K.Backbro, C.Divne
compound source
Molecule: Cellobiose Dehydrogenase
Chain: A, B
Fragment: Cytochrome Type B Domain
Synonym: Cellobiose Oxidoreductase
Ec: 1.1.3.25
 Organism_scientific: Phanerochaete Chrysosporium
Organism_taxid: 5306
Tissue: Secreted
symmetry Space Group: P 65
R_factor 0.187 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.400 139.400 53.940 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PG, BMA, CD, HEM, NAG, PCA enzyme Oxidoreductase E.C.1.1.3.25 BRENDA
related structures by homologous chain: 1D7B, 1D7D
Primary referenceA new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase., Hallberg BM, Bergfors T, Backbro K, Pettersson G, Henriksson G, Divne C, Structure Fold Des 2000 Jan 15;8(1):79-88. PMID:10673428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1d7c.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1D7C
  • CSU: Contacts of Structural Units for 1D7C
  • Likely Quarternary Molecular Structure file(s) for 1D7C
  • Structure Factors (414 Kb)
  • Retrieve 1D7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D7C from S2C, [Save to disk]
  • Re-refined 1d7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D7C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D7C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d7ca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d7cb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d7c] [1d7c_A] [1d7c_B]
  • SWISS-PROT database: [Q01738]
  • Domain organization of [CDH_PHACH] by SWISSPFAM
  • Domain found in 1D7C: [DoH ] by SMART
    • Other resources with information on 1D7C
  • Community annotation for 1D7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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