1D8D Transferase date Oct 22, 1999
title Co-Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A K-Ras4b Peptide Substrate And Fpp Analog At 2.0a Resolution
authors S.B.Long, P.J.Casey, L.S.Beese
compound source
Molecule: Farnesyltransferase (Alpha Subunit)
Chain: A
Fragment: Alpha Subunit
Synonym: Ftase
Ec: 2.5.1.21
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Brain
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_atcc_number: 63134

Molecule: Farnesyltransferase (Beta Subunit)
Chain: B
Fragment: Beta Subunit
Synonym: Ftase
Ec: 2.5.1.21
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Brain
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_atcc_number: 63134

Molecule: K-Ras4b Peptide Substrate
Chain: P
Engineered: Yes

Synthetic: Yes
Other_details: This Synthetic Peptide Is Derived From Human K-Ras4b, Residues 178-188.
symmetry Space Group: P 61
R_factor 0.164 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.919 170.919 69.284 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACT, FII, ZN enzyme Transferase E.C.2.5.1.21 BRENDA
note 1D8D is a representative structure
related structures by homologous chain: 1JCR, 1S63
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe basis for K-Ras4B binding specificity to protein farnesyltransferase revealed by 2 A resolution ternary complex structures., Long SB, Casey PJ, Beese LS, Structure Fold Des 2000 Feb 15;8(2):209-22. PMID:10673434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (1d8d.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 1D8D
  • CSU: Contacts of Structural Units for 1D8D
  • Likely Quarternary Molecular Structure file(s) for 1D8D
  • Structure Factors (579 Kb)
  • Retrieve 1D8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D8D from S2C, [Save to disk]
  • Re-refined 1d8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D8D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D8D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d8da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d8db_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1d8d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d8d_P] [1d8d] [1d8d_B] [1d8d_A]
  • SWISS-PROT database: [Q04631] [Q02293] [P01116]
  • Domain organization of [FNTA_RAT] [FNTB_RAT] [RASK_HUMAN] by SWISSPFAM
  • Other resources with information on 1D8D
  • Community annotation for 1D8D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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