1S63 Transferase date Jan 22, 2004
title Human Protein Farnesyltransferase Complexed With L-778,123 A
authors S.B.Long, P.J.Casey, L.S.Beese
compound source
Molecule: Protein Farnesyltransferasegeranylgeranyltransfe I Alpha Subunit;
Chain: A
Fragment: Alpha Subunit
Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha, Type I Protein Gerany Geranyltransferase Alpha Subunit, Ggtase-I-Alpha;
Ec: 2.5.1.58, 2.5.1.59
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Gene: Fnta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_atcc_number: 63134

Molecule: Protein Farnesyltransferase Beta Subunit
Chain: B
Fragment: Beta Subunit
Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta;
Ec: 2.5.1.58
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Gene: Fntb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_atcc_number: 63134
symmetry Space Group: P 61
R_factor 0.161 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.247 178.247 64.518 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 778, FPP, SUC, ZN enzyme Transferase E.C.2.5.1.58 BRENDA
related structures by homologous chain: 1D8D, 1LD8
Gene
Ontology
ChainFunctionProcessComponent
A
  • acetylcholine receptor regul...
  • skeletal muscle acetylcholin...

  • B


    Primary referenceCrystallographic Analysis Reveals that Anticancer Clinical Candidate L-778,123 Inhibits Protein Farnesyltransferase and Geranylgeranyltransferase-I by Different Binding Modes., Reid TS, Long SB, Beese LS, Biochemistry 2004 Jul 20;43(28):9000-8. PMID:15248757
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (1s63.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 1S63
  • CSU: Contacts of Structural Units for 1S63
  • Likely Quarternary Molecular Structure file(s) for 1S63
  • Structure Factors (810 Kb)
  • Retrieve 1S63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S63 from S2C, [Save to disk]
  • Re-refined 1s63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S63
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S63, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s63a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1s63b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1s63 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s63] [1s63_A] [1s63_B]
  • SWISS-PROT database: [P49354] [P49356]
  • Domain organization of [FNTA_HUMAN] [FNTB_HUMAN] by SWISSPFAM
  • Other resources with information on 1S63
  • Community annotation for 1S63 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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