1LD8 Transferase date Apr 08, 2002
title Co-Crystal Structure Of Human Farnesyltransferase With Farnesyldiphosphate And Inhibitor Compound 49
authors J.S.Taylor, K.L.Terry, L.S.Beese
compound source
Molecule: Protein Farnesyltransferase Alpha Subunit
Chain: A
Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Proteins Prenyltransferase Alpha, Ftase-Alpha;
Ec: 2.5.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Farnesyltransferase Beta Subunit
Chain: B
Synonym: Caax Farnesyltransferase Beta Subunit, Ras Proteins Prenyltransferase Beta, Ftase-Beta;
Ec: 2.5.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.184 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.134 178.134 64.461 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACY, FPP, SUC, U49, ZN BindingDB enzyme Transferase E.C.2.5.1 BRENDA
related structures by homologous chain: 1S63, 1TN6
Gene
Ontology
ChainFunctionProcessComponent
A
  • acetylcholine receptor regul...
  • skeletal muscle acetylcholin...

  • B


    Primary reference3-Aminopyrrolidinone farnesyltransferase inhibitors: design of macrocyclic compounds with improved pharmacokinetics and excellent cell potency., Bell IM, Gallicchio SN, Abrams M, Beese LS, Beshore DC, Bhimnathwala H, Bogusky MJ, Buser CA, Culberson JC, Davide J, Ellis-Hutchings M, Fernandes C, Gibbs JB, Graham SL, Hamilton KA, Hartman GD, Heimbrook DC, Homnick CF, Huber HE, Huff JR, Kassahun K, Koblan KS, Kohl NE, Lobell RB, Lynch JJ Jr, Robinson R, Rodrigues AD, Taylor JS, Walsh ES, Williams TM, Zartman CB, J Med Chem 2002 Jun 6;45(12):2388-409. PMID:12036349
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1ld8.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 1LD8
  • CSU: Contacts of Structural Units for 1LD8
  • Likely Quarternary Molecular Structure file(s) for 1LD8
  • Structure Factors (963 Kb)
  • Retrieve 1LD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LD8 from S2C, [Save to disk]
  • Re-refined 1ld8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LD8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LD8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ld8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ld8b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ld8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ld8] [1ld8_A] [1ld8_B]
  • SWISS-PROT database: [P49354] [P49356]
  • Domain organization of [FNTA_HUMAN] [FNTB_HUMAN] by SWISSPFAM
  • Other resources with information on 1LD8
  • Community annotation for 1LD8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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