1D9S Signaling Protein date Oct 29, 1999
title Tumor Suppressor P15(Ink4b) Structure By Comparative Modelin Data
authors C.Yuan, L.Ji, T.L.Selby, I.J.L.Byeon, M.D.Tsai
compound source
Molecule: Cyclin-Dependent Kinase 4 Inhibitor B
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex-2t
methodSolution NMR
related structures by homologous chain: 2A5E
Gene
Ontology
ChainFunctionProcessComponent
A
  • cyclin-dependent protein ser...


    • Primary referenceTumor suppressor INK4: comparisons of conformational properties between p16(INK4A) and p18(INK4C)., Yuan C, Li J, Selby TL, Byeon IJ, Tsai MD, J Mol Biol 1999 Nov 19;294(1):201-11. PMID:10556039
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (1d9s.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1D9S
  • Original NMR restraints for 1D9S from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D9S from S2C, [Save to disk]
    • View 1D9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D9S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D9S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d9sa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d9s] [1d9s_A]
  • SWISS-PROT database: [P55271]
  • Domain organization of [CDN2B_MOUSE] by SWISSPFAM
  • Domain found in 1D9S: [ANK ] by SMART
    • Other resources with information on 1D9S
  • Community annotation for 1D9S at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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