1DE4 Metal Transport Inhibitor Receptor date Nov 12, 1999
title Hemochromatosis Protein Hfe Complexed With Transferrin Recep
authors M.J.Bennett, J.A.Lebron, P.J.Bjorkman
compound source
Molecule: Hemochromatosis Protein
Chain: A, D, G
Fragment: Ectodomain
Synonym: Hfe
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary Cells
Expression_system_plasmid: Pbj5-Gs

Molecule: Beta-2-Microglobulin
Chain: B, E, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary Cells

Molecule: Transferrin Receptor
Chain: C, F, I
Fragment: Ectodomain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell: High 5 Insect Cells
Expression_system_plasmid: Pacgp67a
symmetry Space Group: C 1 2 1
R_factor 0.231 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.400 144.400 327.100 90.00 93.60 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA, GOL, NAG enzyme
related structures by homologous chain: 1A6Z, 1I7T, 1KPR
Gene
Ontology
ChainFunctionProcessComponent
A, D, G


E, B, H
  • cellular response to iron io...

  • F, C, I


    Primary referenceCrystal structure of the hereditary haemochromatosis protein HFE complexed with transferrin receptor., Bennett MJ, Lebron JA, Bjorkman PJ, Nature 2000 Jan 6;403(6765):46-53. PMID:10638746
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (502 Kb) [Save to disk]
  • Biological Unit Coordinates (1de4.pdb1.gz) 333 Kb
  • Biological Unit Coordinates (1de4.pdb2.gz) 333 Kb
  • LPC: Ligand-Protein Contacts for 1DE4
  • CSU: Contacts of Structural Units for 1DE4
  • Likely Quarternary Molecular Structure file(s) for 1DE4
  • Retrieve 1DE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DE4 from S2C, [Save to disk]
  • View 1DE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DE4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DE4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1de4a1, region A:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1de4a2, region A:4-181 [Jmol] [rasmolscript] [script source]
        - Domain d1de4b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1de4c3, region C:122-189,C:383-608 [Jmol] [rasmolscript] [script source]
        - Domain d1de4c2, region C:190-382 [Jmol] [rasmolscript] [script source]
        - Domain d1de4c1, region C:609-756 [Jmol] [rasmolscript] [script source]
        - Domain d1de4d1, region D:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1de4d2, region D:4-181 [Jmol] [rasmolscript] [script source]
        - Domain d1de4e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1de4f3, region F:122-189,F:383-608 [Jmol] [rasmolscript] [script source]
        - Domain d1de4f2, region F:190-382 [Jmol] [rasmolscript] [script source]
        - Domain d1de4f1, region F:609-756 [Jmol] [rasmolscript] [script source]
        - Domain d1de4g1, region G:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1de4g2, region G:4-181 [Jmol] [rasmolscript] [script source]
        - Domain d1de4h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1de4i3, region I:122-189,I:383-608 [Jmol] [rasmolscript] [script source]
        - Domain d1de4i2, region I:190-382 [Jmol] [rasmolscript] [script source]
        - Domain d1de4i1, region I:609-756 [Jmol] [rasmolscript] [script source]
  • Fold representative 1de4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1de4_E] [1de4_I] [1de4_G] [1de4_B] [1de4_C] [1de4_H] [1de4_D] [1de4_A] [1de4_F] [1de4]
  • SWISS-PROT database: [P61769] [Q30201] [P02786]
  • Belongs to the transferrin receptor, cd71, (tfr) family according to TCDB.
  • Domain organization of [B2MG_HUMAN] [HFE_HUMAN] [TFR1_HUMAN] by SWISSPFAM
  • Domain found in 1DE4: [IGc1 ] by SMART
  • Other resources with information on 1DE4
  • Community annotation for 1DE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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