1DJ0	Lyase	date	Nov 30, 1999
title	The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution
authors	P.G.Foster, L.Huang, D.V.Santi, R.M.Stroud
compound		source
Molecule: Pseudouridine Synthase I Chain: A, B Ec: 4.2.1.70 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.167 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.080 37.400 103.480 90.00 97.68 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CL	enzyme	Lyase E.C.4.2.1.70 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I., Foster PG, Huang L, Santi DV, Stroud RM, Nat Struct Biol 2000 Jan;7(1):23-7. PMID:10625422

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk] Biological Unit Coordinates (1dj0.pdb1.gz) 187 Kb LPC: Ligand-Protein Contacts for 1DJ0 CSU: Contacts of Structural Units for 1DJ0 Likely Quarternary Molecular Structure file(s) for 1DJ0 Retrieve 1DJ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DJ0 from S2C, [Save to disk]

View 1DJ0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DJ0

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1DJ0 1DJ0A 1DJ0B from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DJ0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dj0a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dj0b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dj0] [1dj0_A] [1dj0_B] SWISS-PROT database: [P07649] Domain organization of [TRUA_ECOLI] by SWISSPFAM

Other resources with information on 1DJ0

Community annotation for 1DJ0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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