1DJL Oxidoreductase date Dec 03, 1999
title The Crystal Structure Of Human Transhydrogenase Domain III W Nadp
authors S.A.White, S.J.Peak, N.P.Cotton, J.B.Jackson
compound source
Molecule: Transhydrogenase Diii
Chain: A, B
Fragment: Residues 837-1086
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Heart
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet11c
symmetry Space Group: P 41 2 2
R_factor 0.237 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
58.104 58.104 250.773 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, NAP, SO4 enzyme Oxidoreductase E.C. BRENDA
related structures by homologous chain: 1D4O, 1U31
Primary referenceThe high-resolution structure of the NADP(H)-binding component (dIII) of proton-translocating transhydrogenase from human heart mitochondria., White SA, Peake SJ, McSweeney S, Leonard G, Cotton NP, Jackson JB, Structure Fold Des 2000 Jan 15;8(1):1-12. PMID:10673423
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1djl.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1DJL
  • CSU: Contacts of Structural Units for 1DJL
  • Likely Quarternary Molecular Structure file(s) for 1DJL
  • Retrieve 1DJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DJL from S2C, [Save to disk]
  • View 1DJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DJL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DJL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1djla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1djlb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1djl_A] [1djl] [1djl_B]
  • SWISS-PROT database: [Q13423]
  • Domain organization of [NNTM_HUMAN] by SWISSPFAM
  • Other resources with information on 1DJL
  • Community annotation for 1DJL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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