1DOM Chemokine (Chemoattractant Cytokine) date Jan 21, 1996
title Solution Structure Of The Monocyte Chemoattractant Protein- Dimer Using Heteronuclear, Nmr, Minimized Average Structure
authors P.J.Domaille, T.M.Handel
compound source
Molecule: Mcp-1
Chain: A, B
Synonym: Mcaf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Bl21
methodSolution NMR
related structures by homologous chain: 1DON, 1NCV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHeteronuclear (1H, 13C, 15N) NMR assignments and solution structure of the monocyte chemoattractant protein-1 (MCP-1) dimer., Handel TM, Domaille PJ, Biochemistry 1996 May 28;35(21):6569-84. PMID:8639605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1DOM
  • Original NMR restraints for 1DOM from PDB
  • Retrieve 1DOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DOM from S2C, [Save to disk]
  • View 1DOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DOM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DOM, from MSDmotif at EBI
  • Genome occurence of 1DOM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1doma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1domb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1dom from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dom_B] [1dom_A] [1dom]
  • SWISS-PROT database: [P13500]
  • Domain organization of [CCL2_HUMAN] by SWISSPFAM
  • Domain found in 1DOM: [SCY ] by SMART
  • Other resources with information on 1DOM
  • Community annotation for 1DOM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DOM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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