1NCV Cytokine date Feb 05, 1997
title Determination Cc-Chemokine Mcp-3, Nmr, 7 Structures
authors S.Meunier, J.M.Bernassau, J.C.Guillemot, P.Ferrara, H.Darbon
compound source
Molecule: Monocyte Chemoattractant Protein 3
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Ovary
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
methodSolution NMR
related structures by homologous chain: 1DOM, 2EOT
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cytokine activity
  • CCR1 chemokine receptor bind...
  • cellular calcium ion homeost...

  • Primary referenceDetermination of the three-dimensional structure of CC chemokine monocyte chemoattractant protein 3 by 1H two-dimensional NMR spectroscopy., Meunier S, Bernassau JM, Guillemot JC, Ferrara P, Darbon H, Biochemistry 1997 Apr 15;36(15):4412-22. PMID:9109648
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1NCV
  • Retrieve 1NCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NCV from S2C, [Save to disk]
  • View 1NCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NCV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NCV, from MSDmotif at EBI
  • Genome occurence of 1NCV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ncva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ncvb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ncv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ncv_A] [1ncv] [1ncv_B]
  • SWISS-PROT database: [P80098]
  • Domain organization of [CCL7_HUMAN] by SWISSPFAM
  • Domain found in 1NCV: [SCY ] by SMART
  • Other resources with information on 1NCV
  • Community annotation for 1NCV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1NCV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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