1DSZ STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1 date
authors Rastinejad, F., Wagner, T., Zhao, Q., Khorasanizadeh, S.
compound source
symmetry
R_factor
R_Free 0.2670000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand ZN enzyme
related structures by homologous chain: 1A6Y, 2NLL
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1., Rastinejad F, Wagner T, Zhao Q, Khorasanizadeh S, EMBO J 2000 Mar 1;19(5):1045-54. PMID:10698945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1dsz.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1DSZ
  • CSU: Contacts of Structural Units for 1DSZ
  • Likely Quarternary Molecular Structure file(s) for 1DSZ
  • Retrieve 1DSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DSZ from S2C, [Save to disk]
  • View 1DSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DSZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DSZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dsza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dszb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1dsz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dsz_B] [1dsz_A] [1dsz] [1dsz_D] [1dsz_C]
  • SWISS-PROT database: [P10276] [P19793]
  • Domain organization of [RARA_HUMAN] [RXRA_HUMAN] by SWISSPFAM
  • Domain found in 1DSZ: [ZnF_C4 ] by SMART
  • Other resources with information on 1DSZ
  • Community annotation for 1DSZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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