1DSZ	Transcription Dna	date	Jan 10, 2000
title	Structure Of The Rxrrar Dna-Binding Domain Heterodimer In C With The Retinoic Acid Response Element Dr1
authors	F.Rastinejad, T.Wagner, Q.Zhao, S.Khorasanizadeh
compound		source
Molecule: Dna (5'-D(Cpapgpgptpcpapapapgpgptpcp 3'); Chain: C Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cptpgpapcpcptptptpgpapcpcp 3'); Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Retinoic Acid Receptor Alpha Chain: A Fragment: Residues 82-167 Synonym: Rar-Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: B Fragment: Residues 129-212 Synonym: Rxr-Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
symmetry	Space Group: P 21 21 21	R_factor 0.198 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.660 33.900 101.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ZN	enzyme
related structures	by homologous chain: 1A6Y, 2NLL
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1., Rastinejad F, Wagner T, Zhao Q, Khorasanizadeh S, EMBO J 2000 Mar 1;19(5):1045-54. PMID:10698945

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (1dsz.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 1DSZ CSU: Contacts of Structural Units for 1DSZ Likely Quarternary Molecular Structure file(s) for 1DSZ Retrieve 1DSZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DSZ from S2C, [Save to disk]

View 1DSZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DSZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DSZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dsza_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dszb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dsz_B] [1dsz_A] [1dsz] [1dsz_D] [1dsz_C] SWISS-PROT database: [P10276] [P19793] Domain organization of [RARA_HUMAN] [RXRA_HUMAN] by SWISSPFAM Domain found in 1DSZ: [ZnF_C4 ] by SMART

Other resources with information on 1DSZ

Community annotation for 1DSZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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