2NLL Transcription Dna date Nov 20, 1996
title Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding Domain Heterodimer Bound To Thyroid Response Element Dna
authors F.Rastinejad, T.Perlmann, R.M.Evans, P.B.Sigler
compound source
Molecule: Dna (5'-D(Cpapgpgptpcpaptptp(5iu) Pcpapgpgptpcpapg)-3');
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Cptpgpapcpcptpgpapapaptpgpapcpcpt Pg)- 3');
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Protein (Retinoic Acid Receptor)
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (Thyroid Hormone Receptor)
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.900 65.600 125.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 5IU, ZN enzyme
note 2NLL (Molecule of the Month:pdb155)
related structures by homologous chain: 1BY4, 1DSZ
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural determinants of nuclear receptor assembly on DNA direct repeats., Rastinejad F, Perlmann T, Evans RM, Sigler PB, Nature 1995 May 18;375(6528):203-11. PMID:7746322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2nll.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2NLL
  • CSU: Contacts of Structural Units for 2NLL
  • Likely Quarternary Molecular Structure file(s) for 2NLL
  • Retrieve 2NLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NLL from S2C, [Save to disk]
  • View 2NLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NLL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NLL, from MSDmotif at EBI
  • Genome occurence of 2NLL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2nlla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2nllb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2nll from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nll_D] [2nll_A] [2nll_B] [2nll] [2nll_C]
  • SWISS-PROT database: [P19793] [P10828]
  • Domain organization of [RXRA_HUMAN] [THB_HUMAN] by SWISSPFAM
  • Domain found in 2NLL: [ZnF_C4 ] by SMART
  • Other resources with information on 2NLL
  • Community annotation for 2NLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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