1DTQ Hydrolase Transferase date Jan 13, 2000
title Crystal Structure Of Hiv-1 Reverse Transcriptase In Complex (Pett131a94)
authors J.Ren, J.Diprose, J.Warren, R.M.Esnouf, L.E.Bird, S.Ikemizu, M.Sla J.Milton, J.Balzarini, D.I.Stuart, D.K.Stammers
compound source
Molecule: Hiv-1 Rt A-Chain
Chain: A
Fragment: P66
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Bacteria
Expression_system_common: Eubacteria
Expression_system_taxid: 2

Molecule: Hiv-1 Rt B-Chain
Chain: B
Fragment: P51
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Bacteria
Expression_system_common: Eubacteria
Expression_system_taxid: 2
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.100 115.000 65.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CSD, FPT enzyme
related structures by homologous chain: 1LW0, 1LWF
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referencePhenylethylthiazolylthiourea (PETT) non-nucleoside inhibitors of HIV-1 and HIV-2 reverse transcriptases. Structural and biochemical analyses., Ren J, Diprose J, Warren J, Esnouf RM, Bird LE, Ikemizu S, Slater M, Milton J, Balzarini J, Stuart DI, Stammers DK, J Biol Chem. 2000 Feb 25;275(8):5633-9. PMID:10681546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (1dtq.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 1DTQ
  • CSU: Contacts of Structural Units for 1DTQ
  • Likely Quarternary Molecular Structure file(s) for 1DTQ
  • Structure Factors (268 Kb)
  • Retrieve 1DTQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DTQ from S2C, [Save to disk]
  • Re-refined 1dtq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DTQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DTQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DTQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dtqa2, region A:4-429 [Jmol] [rasmolscript] [script source]
        - Domain d1dtqa1, region A:430-539 [Jmol] [rasmolscript] [script source]
        - Domain d1dtqb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1dtq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dtq_A] [1dtq_B] [1dtq]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 1DTQ
  • Community annotation for 1DTQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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