1LW0 Transferase date May 30, 2002
title Crystal Structure Of T215y Mutant Hiv-1 Reverse Transcriptase In Complex With Nevirapine
authors J.Ren, P.P.Chamberlain, C.E.Nichols, L.Douglas, D.I.Stuart, D.K.Stammers
compound source
Molecule: Hiv-1 Reverse Transcriptase
Chain: A
Fragment: P66
Synonym: Hiv-1 Rt
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Hiv-1 Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg-1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk233-2

Molecule: Hiv-1 Reverse Transcriptase
Chain: B
Fragment: P51
Synonym: Hiv-1 Rt
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Hiv-1 Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg-1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk233-2
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.700 115.000 65.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CSD, NVP, PO4 BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1DTQ, 1IKX
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structures of Zidovudine- or Lamivudine-resistant human immunodeficiency virus type 1 reverse transcriptases containing mutations at codons 41, 184, and 215., Chamberlain PP, Ren J, Nichols CE, Douglas L, Lennerstrand J, Larder BA, Stuart DI, Stammers DK, J Virol 2002 Oct;76(19):10015-9. PMID:12208978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (1lw0.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 1LW0
  • CSU: Contacts of Structural Units for 1LW0
  • Likely Quarternary Molecular Structure file(s) for 1LW0
  • Structure Factors (262 Kb)
  • Retrieve 1LW0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LW0 from S2C, [Save to disk]
  • Re-refined 1lw0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LW0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LW0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LW0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lw0a2, region A:4-429 [Jmol] [rasmolscript] [script source]
        - Domain d1lw0a1, region A:430-537 [Jmol] [rasmolscript] [script source]
        - Domain d1lw0b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1lw0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lw0_B] [1lw0] [1lw0_A]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 1LW0
  • Community annotation for 1LW0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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