1DV0 Dna Binding Protein date Jan 19, 2000
title Refined Nmr Solution Structure Of The C-Terminal Uba Domain Of The Human Homologue Of Rad23a (Hhr23a)
authors E.S.Withers-Ward, T.D.Mueller, I.S.Chen, J.Feigon
compound source
Molecule: Dna Repair Protein Hhr23a
Chain: A
Fragment: Uba Domain (C-Terminal Domain)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t (Pharmacia)
methodSolution NMR
note 1DV0 supersedes 1UBA
related structures by homologous chain: 1F4I
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr., Dieckmann T, Withers-Ward ES, Jarosinski MA, Liu CF, Chen IS, Feigon J, Nat Struct Biol. 1998 Dec;5(12):1042-7. PMID:9846873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1DV0
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1DV0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DV0 from S2C, [Save to disk]
  • View 1DV0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DV0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DV0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dv0a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dv0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dv0_A] [1dv0]
  • SWISS-PROT database: [P54725]
  • Domain organization of [RD23A_HUMAN] by SWISSPFAM
  • Domain found in 1DV0: [UBA ] by SMART
  • Other resources with information on 1DV0
  • Community annotation for 1DV0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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