1F4I Dna Binding Protein,Transcription date Jun 07, 2000
title Solution Structure Of The Hhr23a Uba(2) Mutant P333e, Deficient In Binding The Hiv-1 Accessory Protein Vpr
authors E.S.Withers-Ward, T.D.Mueller, I.S.Chen, J.Feigon
compound source
Molecule: Uv Excision Repair Protein Protein Rad23 Homolog A;
Chain: A
Fragment: C-Terminal Uba Domain
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Sequence Of This Peptide Naturally Occurs In Humans (Homo Sapiens).
methodSolution NMR
related structures by homologous chain: 1DV0, 1QZE
Primary referenceBiochemical and structural analysis of the interaction between the UBA(2) domain of the DNA repair protein HHR23A and HIV-1 Vpr., Withers-Ward ES, Mueller TD, Chen IS, Feigon J, Biochemistry 2000 Nov 21;39(46):14103-12. PMID:11087358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1F4I
  • Retrieve 1F4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F4I from S2C, [Save to disk]
  • View 1F4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F4I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F4I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f4ia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f4i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f4i] [1f4i_A]
  • SWISS-PROT database: [P54725]
  • Domain organization of [RD23A_HUMAN] by SWISSPFAM
  • Domain found in 1F4I: [UBA ] by SMART
  • Other resources with information on 1F4I
  • Community annotation for 1F4I at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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