1DYN Signal Transduction Protein date Dec 21, 1994
title Crystal Structure At 2.2 Angstroms Resolution Of The Pleckst Homology Domain From Human Dynamin
authors K.M.Ferguson, M.A.Lemmon, J.Schlessinger, P.B.Sigler
compound source
Molecule: Dynamin
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_plasmid: Pet11a
symmetry Space Group: I 4 2 2
R_factor 0.200 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.200 85.200 132.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 2DYN
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure at 2.2 A resolution of the pleckstrin homology domain from human dynamin., Ferguson KM, Lemmon MA, Schlessinger J, Sigler PB, Cell 1994 Oct 21;79(2):199-209. PMID:7954789
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1dyn.pdb1.gz) 316 Kb
  • CSU: Contacts of Structural Units for 1DYN
  • Likely Quarternary Molecular Structure file(s) for 1DYN
  • Retrieve 1DYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DYN from S2C, [Save to disk]
    • View 1DYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DYN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DYN, from MSDmotif at EBI
  • Genome occurence of 1DYN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dyna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dynb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dyn_B] [1dyn_A] [1dyn]
  • SWISS-PROT database: [Q05193]
  • Domain organization of [DYN1_HUMAN] by SWISSPFAM
  • Domain found in 1DYN: [PH ] by SMART
    • Other resources with information on 1DYN
  • Community annotation for 1DYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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