2DYN	Signal Transduction	date	Jul 21, 1997
title	Dynamin (Pleckstrin Homology Domain) (Dynph)
authors	D.E.Timm
compound		source
Molecule: Dynamin Chain: A, B Fragment: Pleckstrin Homology (Ph) Domain Synonym: Ph Domain, Dynph Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1 Blue Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t Other_details: Expressed As Gst-Fusion Protein, Cleaved Wit Thrombin
symmetry	Space Group: I 4 2 2	R_factor 0.214 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.020 86.020 137.620 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
note	2DYN is a representative structure
related structures	by homologous chain: 1DYN
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of the pleckstrin homology domain from dynamin., Timm D, Salim K, Gout I, Guruprasad L, Waterfield M, Blundell T, Nat Struct Biol 1994 Nov;1(11):782-8. PMID:7634088

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (2dyn.pdb1.gz) 303 Kb CSU: Contacts of Structural Units for 2DYN Likely Quarternary Molecular Structure file(s) for 2DYN Structure Factors (88 Kb) Retrieve 2DYN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DYN from S2C, [Save to disk] Re-refined 2dyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DYN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DYN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DYN, from MSDmotif at EBI Genome occurence of 2DYN's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2dyna_, region A [Jmol] [rasmolscript] [script source]     - Domain d2dynb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dyn_B] [2dyn] [2dyn_A] SWISS-PROT database: [Q05193] Domain organization of [DYN1_HUMAN] by SWISSPFAM Domain found in 2DYN: [PH ] by SMART

Other resources with information on 2DYN

Community annotation for 2DYN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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