1DZB Immune System date Feb 23, 2000
title Crystal Structure Of Phage Library-Derived Single-Chain Fv F 1f9 In Complex With Turkey Egg-White Lysozyme
authors J.Ay, T.Keitel, G.Kuettner, H.Wessner, C.Scholz, M.Hahn, W.Hoehne
compound source
Molecule: Scfv Fragment 1f9
Chain: A, B
Fragment: See Remark 400
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Turkey Egg-White Lysozyme C
Chain: X, Y
Synonym: 1,4-Beta-N-Acetylmuramidase C
Ec: 3.2.1.17
Organism_scientific: Meleagris Gallopavo
Organism_common: Common Turkey
Organism_taxid: 9103
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.710 112.440 80.000 90.00 97.67 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1C10, 1D6V, 1DQJ, 25C8
Gene
Ontology
ChainFunctionProcessComponent
X, Y


Primary referenceCrystal structure of a phage library-derived single-chain Fv fragment complexed with turkey egg-white lysozyme at 2.0 A resolution., Ay J, Keitel T, Kuttner G, Wessner H, Scholz C, Hahn M, Hohne W, J Mol Biol 2000 Aug 11;301(2):239-46. PMID:10926506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1dzb.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (1dzb.pdb2.gz) 59 Kb
  • CSU: Contacts of Structural Units for 1DZB
  • Likely Quarternary Molecular Structure file(s) for 1DZB
  • Structure Factors (309 Kb)
  • Retrieve 1DZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DZB from S2C, [Save to disk]
  • Re-refined 1dzb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DZB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DZB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dzba1, region A:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1dzba2, region A:201-307 [Jmol] [rasmolscript] [script source]
        - Domain d1dzbb1, region B:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1dzbb2, region B:201-307 [Jmol] [rasmolscript] [script source]
        - Domain d1dzbx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1dzby_, region Y [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dzb_Y] [1dzb_X] [1dzb_A] [1dzb] [1dzb_B]
  • SWISS-PROT database: [P00703]
  • Domain organization of [LYSC_MELGA] by SWISSPFAM
  • Domains found in 1DZB: [IGv] [LYZ1 ] by SMART
    • Other resources with information on 1DZB
  • Community annotation for 1DZB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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