1DZB Crystal structure of phage library-derived single-chain Fv fragment 1F9 in complex with turkey egg-white lysozyme date
authors Ay, J., Keitel, T., Kuettner, G., Wessner, H., Scholz, C., Hahn, M., Hoehne, W.
compound source
symmetry
R_factor
R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1C10, 1D6V, 1DQJ, 25C8
Gene
Ontology
ChainFunctionProcessComponent
X, Y


Primary referenceCrystal structure of a phage library-derived single-chain Fv fragment complexed with turkey egg-white lysozyme at 2.0 A resolution., Ay J, Keitel T, Kuttner G, Wessner H, Scholz C, Hahn M, Hohne W, J Mol Biol 2000 Aug 11;301(2):239-46. PMID:10926506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1dzb.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (1dzb.pdb2.gz) 59 Kb
  • CSU: Contacts of Structural Units for 1DZB
  • Likely Quarternary Molecular Structure file(s) for 1DZB
  • Structure Factors (309 Kb)
  • Retrieve 1DZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DZB from S2C, [Save to disk]
  • Re-refined 1dzb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DZB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DZB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dzba1, region A:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1dzba2, region A:201-307 [Jmol] [rasmolscript] [script source]
        - Domain d1dzbb1, region B:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1dzbb2, region B:201-307 [Jmol] [rasmolscript] [script source]
        - Domain d1dzbx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1dzby_, region Y [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dzb_Y] [1dzb_X] [1dzb_A] [1dzb] [1dzb_B]
  • SWISS-PROT database: [P00703]
  • Domain organization of [LYSC_MELGA] by SWISSPFAM
  • Domains found in 1DZB: [IGv] [LYZ1 ] by SMART
  • Other resources with information on 1DZB
  • Community annotation for 1DZB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science