1DQJ CRYSTAL STRUCTURE OF THE ANTI-LYSOZYME ANTIBODY HYHEL-63 COMPLEXED WITH HEN EGG WHITE LYSOZYME date
authors Li, H., Mariuzza, R.A.
compound source
symmetry
R_factor
R_Free 0.25
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1BB6, 1DZB, 1IC7, 1K4C, 1LO2
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceThree-dimensional structures of the free and antigen-bound Fab from monoclonal antilysozyme antibody HyHEL-63(,)., Li Y, Li H, Smith-Gill SJ, Mariuzza RA, Biochemistry 2000 May 30;39(21):6296-309. PMID:10828942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1dqj.pdb1.gz) 95 Kb
  • CSU: Contacts of Structural Units for 1DQJ
  • Likely Quarternary Molecular Structure file(s) for 1DQJ
  • Structure Factors (347 Kb)
  • Retrieve 1DQJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DQJ from S2C, [Save to disk]
  • Re-refined 1dqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DQJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DQJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DQJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dqja1, region A:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1dqja2, region A:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1dqjb1, region B:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1dqjb2, region B:114-221 [Jmol] [rasmolscript] [script source]
        - Domain d1dqjc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1dqj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dqj_B] [1dqj] [1dqj_A] [1dqj_C]
  • SWISS-PROT database: [P01837] [P00698]
  • Domain organization of [IGKC_MOUSE] [LYSC_CHICK] by SWISSPFAM
  • Domains found in 1DQJ: [IG_like] [IGv] [LYZ1 ] by SMART
  • Other resources with information on 1DQJ
  • Community annotation for 1DQJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science