1IC7	Protein Binding Hydrolase	date	Mar 30, 2001
title	Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen Lysozy
authors	M.Shiroishi, A.Yokota, K.Tsumoto, H.Kondo, Y.Nishimiya, K.Horii, M.Matsushima, K.Ogasahara, K.Yutani, I.Kumagai
compound		source
Molecule: Lysozyme Binding Ig Kappa Chain Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Igg1 Fab Chain H Chain: H Fragment: Residues 1-114 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Lysozyme C Chain: Y Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
symmetry	Space Group: P 41 21 2	R_factor 0.177 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.215 57.215 237.903 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand		enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1DQJ, 1GHL, 1KIP, 1LJK
Gene Ontology	Chain Function Process Component H L Y
Primary reference	Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex., Shiroishi M, Yokota A, Tsumoto K, Kondo H, Nishimiya Y, Horii K, Matsushima M, Ogasahara K, Yutani K, Kumagai I, J Biol Chem 2001 Jun 22;276(25):23042-50. PMID:11297547

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1ic7.pdb1.gz) 57 Kb CSU: Contacts of Structural Units for 1IC7 Likely Quarternary Molecular Structure file(s) for 1IC7 Retrieve 1IC7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IC7 from S2C, [Save to disk]

View 1IC7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IC7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IC7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ic7h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1ic7l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1ic7y_, region Y [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ic7] [1ic7_L] [1ic7_Y] [1ic7_H] SWISS-PROT database: [P01823] [P01642] [P00698] Domain organization of [HVM47_MOUSE] [KV5A9_MOUSE] [LYSC_CHICK] by SWISSPFAM Domains found in 1IC7: [IGv] [LYZ1 ] by SMART

Other resources with information on 1IC7

Community annotation for 1IC7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1IC7 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---