1E7Z Rna Binding Domain date Sep 13, 2000
title Crystal Structure Of The Emap2rna Binding Domain Of The P43 From Human Aminoacyl-Trna Synthetase Complex
authors S.Pasqualato, P.Kerjan, L.Renault, J.Menetrey, M.Mirande, J.Cherf
compound source
Molecule: Endothelial-Monocyte Activating Polypeptide II
Chain: A
Fragment: C-Terminal Domainrna Binding Domain Residues 147
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.141 53.938 41.371 90.00 111.92 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand HG enzyme
related structures by homologous chain: 1EUJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry., Renault L, Kerjan P, Pasqualato S, Menetrey J, Robinson JC, Kawaguchi S, Vassylyev DG, Yokoyama S, Mirande M, Cherfils J, EMBO J 2001 Feb 1;20(3):570-8. PMID:11157763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1e7z.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1E7Z
  • CSU: Contacts of Structural Units for 1E7Z
  • Likely Quarternary Molecular Structure file(s) for 1E7Z
  • Structure Factors (76 Kb)
  • Retrieve 1E7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E7Z from S2C, [Save to disk]
  • Re-refined 1e7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E7Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E7Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e7za_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e7z_A] [1e7z]
  • SWISS-PROT database: [Q12904]
  • Domain organization of [AIMP1_HUMAN] by SWISSPFAM
  • Other resources with information on 1E7Z
  • Community annotation for 1E7Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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