1EUJ Cytokine date Apr 17, 2000
title A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Pre Aminoacyl-Trna Synthetases
authors Y.Kim, J.Shin, R.Li, C.Cheong, S.Kim
compound source
Molecule: Endothelial Monocyte Activating Polypeptide 2
Chain: A, B
Synonym: Emap 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.010 38.340 80.990 90.00 112.90 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1E7Z, 1FL0
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel anti-tumor cytokine contains an RNA binding motif present in aminoacyl-tRNA synthetases., Kim Y, Shin J, Li R, Cheong C, Kim K, Kim S, J Biol Chem 2000 Sep 1;275(35):27062-8. PMID:10852899
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1euj.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1euj.pdb2.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1EUJ
  • Likely Quarternary Molecular Structure file(s) for 1EUJ
  • Retrieve 1EUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EUJ from S2C, [Save to disk]
  • View 1EUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EUJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EUJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1euja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1eujb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1euj_A] [1euj_B] [1euj]
  • SWISS-PROT database: [Q12904]
  • Domain organization of [AIMP1_HUMAN] by SWISSPFAM
  • Other resources with information on 1EUJ
  • Community annotation for 1EUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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