1EBV Oxidoreductase date Jan 24, 2000
title Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
authors P.J.Loll, C.T.Sharkey, S.J.O'Connor, D.J.Fitzgerald
compound source
Molecule: Prostaglandin H2 Synthase
Chain: A
Ec: 1.14.99.1
Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Organ: Seminal Vesicles
symmetry Space Group: I 2 2 2
R_factor 0.218 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.870 207.460 221.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand HEM, NAG, OAS, SCL enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


  • Primary referenceO-acetylsalicylhydroxamic acid, a novel acetylating inhibitor of prostaglandin H2 synthase: structural and functional characterization of enzyme-inhibitor interactions., Loll PJ, Sharkey CT, O'Connor SJ, Dooley CM, O'Brien E, Devocelle M, Nolan KB, Selinsky BS, Fitzgerald DJ, Mol Pharmacol 2001 Dec;60(6):1407-13. PMID:11723249
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1ebv.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1EBV
  • CSU: Contacts of Structural Units for 1EBV
  • Likely Quarternary Molecular Structure file(s) for 1EBV
  • Structure Factors (517 Kb)
  • Retrieve 1EBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EBV from S2C, [Save to disk]
  • View 1EBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EBV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EBV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ebva2, region A:33-73 [Jmol] [rasmolscript] [script source]
        - Domain d1ebva1, region A:74-583 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ebv] [1ebv_A]
  • SWISS-PROT database: [P05979]
  • Domain organization of [PGH1_SHEEP] by SWISSPFAM
  • Domain found in 1EBV: [EGF ] by SMART
  • Other resources with information on 1EBV
  • Community annotation for 1EBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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