1EDY	Protein Binding	date	Jan 28, 2000
title	Crystal Structure Of Rat Alpha 1-Macroglobulin Receptor Bind
authors	T.Xiao, D.L.Decamp, S.R.Sprang
compound		source
Molecule: Alpha 1-Macroglobulin Chain: A, B Fragment: Receptor Binding Domain Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Tissue: Plasma Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pqe30
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.377 36.151 77.978 90.00 105.88 90.00
method	X-Ray Diffraction	resolution	2.30 Å
note	1EDY is a representative structure
related structures	by homologous chain: 1AYO, 1BV8
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of a rat alpha 1-macroglobulin receptor-binding domain dimer., Xiao T, DeCamp DL, Spran SR, Protein Sci 2000 Oct;9(10):1889-97. PMID:11106161

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (1edy.pdb1.gz) 89 Kb CSU: Contacts of Structural Units for 1EDY Likely Quarternary Molecular Structure file(s) for 1EDY Structure Factors (144 Kb) Retrieve 1EDY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1EDY from S2C, [Save to disk] Re-refined 1edy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1EDY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1EDY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1EDY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1edya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1edyb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1edy_A] [1edy_B] [1edy] SWISS-PROT database: [Q63041] Domain organization of [A1M_RAT] by SWISSPFAM Domain found in 1EDY: [A2M_recep ] by SMART

Other resources with information on 1EDY

Community annotation for 1EDY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---