1EG0 Ribosome date Feb 11, 2000
title Fitting Of Components With Known Structure Into An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome
authors I.S.Gabashvili, R.K.Agrawal, C.M.T.Spahn, R.A.Grassucci, D.I.Svergun, J.Frank, P.Penczek
compound source
Molecule: Fragment Of 16s Rrna Helix 23
Chain: I
Fragment: Residues 673-713
Other_details: Modeled As Analogous Fragment Of T. Thermophilus Taken From Pdb Entry 1qd7;
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Fragment Of 23s Rrna
Chain: L
Fragment: Residues 1051-1108
Other_details: T. Maritima Rna Sequence And Model Taken From Pdb Entry 1mms;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Helix 95 Of 23s Rrna
Chain: M
Other_details: E.Coli Rna Sequence And Model Taken From Pdb Entry 480d;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Formyl-Methionyl-Trna
Chain: O
Synonym: Fmet-Trna
Other_details: E.Coli Fmet-Trna Sequence And Model Taken From Pdb Entry 2fmt;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S4 Ribosomal Protein)
Chain: A
Other_details: Modeled By Analogous Protein Of B. Stearothermophilus Taken From Pdb Entry 1c06;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S5 Ribosomal Protein)
Chain: B
Other_details: Modeled By Analogous Protein Of B. Stearothermophilus Taken From Pdb Entry 1pkp;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S6 Ribosomal Protein)
Chain: C
Other_details: Modeled By Analogous Protein Of T.Thermophilus Taken From Pdb Entry 1ris;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S7 Ribosomal Protein)
Chain: D
Other_details: Modeled By Analogous Protein Of T. Thermophilus Taken From Pdb Entry 1rss;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S8 Ribosomal Protein)
Chain: E
Other_details: Modeled By Analogous Protein Of T. Thermophilus Taken From Pdb Entry 1an7;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S15 Ribosomal Protein)
Chain: F
Other_details: Modeled By Analogous Protein Of B. Stearothermophilus Taken From Pdb Entry 1a32;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S17 Ribosomal Protein)
Chain: G
Other_details: Modeled By Analogous Protein Of B. Stearothermophilus Taken From Pdb Entries 1rip And 1qd7;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (S20 Ribosomal Protein)
Chain: H
Other_details: Modeled By Analogous Protein Of T. Thermophilus Taken From Pdb Entry 1qd7;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (Ribosomal Protein L1)
Chain: N
Other_details: Modeled By Analogous Protein Of T. Thermophilus Taken From Pdb Entry 1ad2;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (Ribosomal Protein L6)
Chain: J
Mutation: Yes
Other_details: Modeled By Analogous Protein Of T. Stearothermophilus Taken From Pdb Entry 1rl6;

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Protein (Ribosomal Protein L11)
Chain: K
Other_details: Modeled By Analogous Protein Of T. Maritima Taken From Pdb Entry 1mms

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 11.50 Å
ligand 4SU, 5MU, H2U, OMC, PSU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


J


K


N


Primary referenceSolution structure of the E. coli 70S ribosome at 11.5 A resolution., Gabashvili IS, Agrawal RK, Spahn CM, Grassucci RA, Svergun DI, Frank J, Penczek P, Cell 2000 Mar 3;100(5):537-49. PMID:10721991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1eg0.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1EG0
  • CSU: Contacts of Structural Units for 1EG0
  • Likely Quarternary Molecular Structure file(s) for 1EG0
  • Retrieve 1EG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EG0 from S2C, [Save to disk]
  • View 1EG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EG0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eg0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1eg0b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1eg0c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1eg0d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1eg0e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1eg0f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1eg0g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1eg0h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1eg0i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1eg0j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1eg0k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1eg0l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1eg0m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1eg0n_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1eg0o_, region O [Jmol] [rasmolscript] [script source]
  • Fold representative 1eg0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eg0] [1eg0_O] [1eg0_I] [1eg0_E] [1eg0_K] [1eg0_D] [1eg0_F] [1eg0_M] [1eg0_J] [1eg0_C] [1eg0_A] [1eg0_B] [1eg0_G] [1eg0_L] [1eg0_N] [1eg0_H]
  • SWISS-PROT database: [P29395] [P27150] [P02391] [P05766] [P23828] [P81288] [P02357] [P23370] [P17291] [P24319]
  • Domain organization of [RL11_THEMA] [RL1_THETH] [RL6_BACST] [RS15_BACST] [RS17_BACST] [RS4_BACST] [RS5_BACST] [RS6_THETH] [RS7_THET8] [RS8_THETH] by SWISSPFAM
  • Domains found in 1EG0: [RL11] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1EG0
  • Community annotation for 1EG0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1EG0 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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