1EI7 Virus date Feb 24, 2000
title Tmv Coat Protein Refined From The 4-Layer Aggregate
authors B.Bhyravbhatla, S.J.Watowich, D.L.Caspar
compound source
Molecule: Coat Protein
Chain: A, B
 Organism_scientific: Tobacco Mosaic Virus
Organism_taxid: 12242
symmetry Space Group: P 21 21 2
R_factor 0.195 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
220.845 171.701 226.175 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
note 1EI7 (Molecule of the Month:pdb109)
related structures by homologous chain: 2TMV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRefined atomic model of the four-layer aggregate of the tobacco mosaic virus coat protein at 2.4-A resolution., Bhyravbhatla B, Watowich SJ, Caspar DL, Biophys J 1998 Jan;74(1):604-15. PMID:9449361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1ei7.pdb1.gz) 1865 Kb
  • CSU: Contacts of Structural Units for 1EI7
  • Likely Quarternary Molecular Structure file(s) for 1EI7
  • Structure Factors (2044 Kb)
  • Retrieve 1EI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EI7 from S2C, [Save to disk]
  • Re-refined 1ei7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1EI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EI7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EI7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ei7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ei7b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ei7_B] [1ei7_A] [1ei7]
  • SWISS-PROT database: [P69687]
  • Domain organization of [COAT_TMV] by SWISSPFAM
    • Other resources with information on 1EI7
  • Community annotation for 1EI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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