2TMV Virus Rna date Sep 15, 1988
title Visualization Of Protein-Nucleic Acid Interactions In A Viru Structure Of Intact Tobacco Mosaic Virus At 2.9 Angstroms R By X-Ray Fiber Diffraction
authors G.Stubbs, R.Pattanayek, K.Namba
compound source
Molecule: Rna (5'-R(Pgpapa)-3')
Chain: R
Engineered: Yes
Synthetic: Yes

Molecule: Tmv Coat Protein
Chain: P
Engineered: Yes

Organism_scientific: Tobacco Mosaic Virus
Organism_taxid: 12243
Strain: Vulgare
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 2.90 Å
ligand CA enzyme
note 2TMV (Molecule of the Month:pdb109)
related structures by homologous chain: 1EI7
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceVisualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction., Namba K, Pattanayek R, Stubbs G, J Mol Biol 1989 Jul 20;208(2):307-25. PMID:2769760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2tmv.pdb1.gz) 1320 Kb
  • LPC: Ligand-Protein Contacts for 2TMV
  • CSU: Contacts of Structural Units for 2TMV
  • Likely Quarternary Molecular Structure file(s) for 2TMV
  • Retrieve 2TMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2TMV from S2C, [Save to disk]
  • View 2TMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2TMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2TMV, from MSDmotif at EBI
  • Genome occurence of 2TMV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2tmvp_, region P [Jmol] [rasmolscript] [script source]
  • Fold representative 2tmv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2tmv_R] [2tmv] [2tmv_P]
  • SWISS-PROT database: [P69687]
  • Domain organization of [COAT_TMV] by SWISSPFAM
  • Other resources with information on 2TMV
  • Community annotation for 2TMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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