1EIF EUKARYOTIC TRANSLATION INITIATION FACTOR 5A FROM METHANOCOCCUS JANNASCHII date
authors Kim, K.K., Hung, L.W., Yokota, H., Kim, R., Kim, S.H.
compound source
symmetry
R_factor
R_Free 0.2890000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
related structures by homologous chain: 2EIF
Gene
Ontology
ChainFunctionProcessComponent
A
  • translation elongation facto...


  • Primary referenceCrystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 A resolution., Kim KK, Hung LW, Yokota H, Kim R, Kim SH, Proc Natl Acad Sci U S A 1998 Sep 1;95(18):10419-24. PMID:9724718
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1eif.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1EIF
  • Likely Quarternary Molecular Structure file(s) for 1EIF
  • Structure Factors (155 Kb)
  • Retrieve 1EIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EIF from S2C, [Save to disk]
  • Re-refined 1eif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EIF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EIF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eif_1, region 4-73 [Jmol] [rasmolscript] [script source]
        - Domain d1eif_2, region 74-133 [Jmol] [rasmolscript] [script source]
  • Fold representative 1eif from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eif_A] [1eif]
  • SWISS-PROT database: [Q58625]
  • Domain organization of [IF5A_METJA] by SWISSPFAM
  • Domain found in 1EIF: [eIF-5a ] by SMART
  • Other resources with information on 1EIF
  • Community annotation for 1EIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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