2EIF Gene Regulation date Oct 12, 1998
title Eukaryotic Translation Initiation Factor 5a From Methanococc Jannaschii
authors K.K.Kim, L.W.Hung, R.Kim, S.H.Kim, Berkeley Structural Genomics (Bsgc)
compound source
Molecule: Protein (Eukaryotic Translation Initiation Factor
Chain: A
Synonym: If-5a
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 243232
Strain: Dsm 2661
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet21apsjs1240
symmetry Space Group: C 1 2 1
R_factor 0.214 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.483 40.198 48.580 90.00 124.29 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1EIF
Gene
Ontology
ChainFunctionProcessComponent
A
  • translation elongation facto...


    • Primary referenceCrystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 A resolution., Kim KK, Hung LW, Yokota H, Kim R, Kim SH, Proc Natl Acad Sci U S A 1998 Sep 1;95(18):10419-24. PMID:9724718
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2eif.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2EIF
  • Likely Quarternary Molecular Structure file(s) for 2EIF
  • Structure Factors (82 Kb)
  • Retrieve 2EIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EIF from S2C, [Save to disk]
  • Re-refined 2eif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2EIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EIF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EIF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2eifa1, region A:1-73 [Jmol] [rasmolscript] [script source]
        - Domain d2eifa2, region A:74-132 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eif_A] [2eif]
  • SWISS-PROT database: [Q58625]
  • Domain organization of [IF5A_METJA] by SWISSPFAM
  • Domain found in 2EIF: [eIF-5a ] by SMART
    • Other resources with information on 2EIF
  • Community annotation for 2EIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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