1EX0 Transferase date Apr 28, 2000
title Human Factor Xiii, Mutant W279f Zymogen
authors R.J.Garzon, K.P.Pratt, P.D.Bishop, I.Le Trong, R.E.Stenkamp, D.C.
compound source
Molecule: Coagulation Factor Xiii A Chain
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Zm118
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pd16
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.234
length a length b length c angle alpha angle beta angle gamma
100.540 70.640 133.380 90.00 106.08 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, PGO, PO4 enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1EVU
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (1ex0.pdb1.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 1EX0
  • CSU: Contacts of Structural Units for 1EX0
  • Likely Quarternary Molecular Structure file(s) for 1EX0
  • Structure Factors (1121 Kb)
  • Retrieve 1EX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EX0 from S2C, [Save to disk]
  • Re-refined 1ex0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EX0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EX0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ex0a4, region A:191-510 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0a2, region A:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0a3, region A:628-727 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0a1, region A:7-190 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0b4, region B:191-511 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0b1, region B:5-190 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0b2, region B:517-627 [Jmol] [rasmolscript] [script source]
        - Domain d1ex0b3, region B:628-730 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ex0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ex0] [1ex0_B] [1ex0_A]
  • SWISS-PROT database: [P00488]
  • Domain organization of [F13A_HUMAN] by SWISSPFAM
  • Domain found in 1EX0: [TGc ] by SMART
  • Other resources with information on 1EX0
  • Community annotation for 1EX0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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