1EVU Transferase date Apr 20, 2000
title Human Factor Xiii With Calcium Bound In The Ion Site
authors R.J.Garzon, K.P.Pratt, P.D.Bishop, I.Le Trong, R.E.Stenkamp, D.C.Teller
compound source
Molecule: Coagulation Factor Xiii
Chain: A, B
Ec: 2.3.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Zm118
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.172 70.764 133.822 90.00 106.11 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand CA, PGO, SAC enzyme Transferase E.C.2.3.2.13 BRENDA
related structures by homologous chain: 1EX0, 1F13
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1evu.pdb1.gz) 253 Kb
  • LPC: Ligand-Protein Contacts for 1EVU
  • CSU: Contacts of Structural Units for 1EVU
  • Likely Quarternary Molecular Structure file(s) for 1EVU
  • Structure Factors (850 Kb)
  • Retrieve 1EVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EVU from S2C, [Save to disk]
  • Re-refined 1evu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EVU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EVU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1evua1, region A:1-190 [Jmol] [rasmolscript] [script source]
        - Domain d1evua4, region A:191-508 [Jmol] [rasmolscript] [script source]
        - Domain d1evua2, region A:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1evua3, region A:628-727 [Jmol] [rasmolscript] [script source]
        - Domain d1evub4, region B:191-508 [Jmol] [rasmolscript] [script source]
        - Domain d1evub2, region B:515-627 [Jmol] [rasmolscript] [script source]
        - Domain d1evub3, region B:628-727 [Jmol] [rasmolscript] [script source]
        - Domain d1evub1, region B:8-190 [Jmol] [rasmolscript] [script source]
  • Fold representative 1evu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1evu_A] [1evu] [1evu_B]
  • SWISS-PROT database: [P00488]
  • Domain organization of [F13A_HUMAN] by SWISSPFAM
  • Domain found in 1EVU: [TGc ] by SMART
  • Other resources with information on 1EVU
  • Community annotation for 1EVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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