1F13 Coagulation Factor date Jan 16, 1998
title Recombinant Human Cellular Coagulation Factor Xiii
authors M.S.Weiss, R.Hilgenfeld
compound source
Molecule: Cellular Coagulation Factor Xiii Zymogen
Chain: A, B
Fragment: A2-Homodimer
Synonym: Cfxiii
Ec: 2.3.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Placenta
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.590 72.780 101.050 90.00 106.08 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Transferase E.C.2.3.2.13 BRENDA
related structures by homologous chain: 1EVU, 1GGU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTwo non-proline cis peptide bonds may be important for factor XIII function., Weiss MS, Metzner HJ, Hilgenfeld R, FEBS Lett 1998 Feb 27;423(3):291-6. PMID:9515726
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (1f13.pdb1.gz) 243 Kb
  • CSU: Contacts of Structural Units for 1F13
  • Likely Quarternary Molecular Structure file(s) for 1F13
  • Structure Factors (642 Kb)
  • Retrieve 1F13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F13 from S2C, [Save to disk]
  • Re-refined 1f13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F13
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F13, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f13a4, region A:191-515 [Jmol] [rasmolscript] [script source]
        - Domain d1f13a1, region A:5-190 [Jmol] [rasmolscript] [script source]
        - Domain d1f13a2, region A:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1f13a3, region A:628-728 [Jmol] [rasmolscript] [script source]
        - Domain d1f13b4, region B:191-515 [Jmol] [rasmolscript] [script source]
        - Domain d1f13b2, region B:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1f13b1, region B:6-190 [Jmol] [rasmolscript] [script source]
        - Domain d1f13b3, region B:628-728 [Jmol] [rasmolscript] [script source]
  • Fold representative 1f13 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f13] [1f13_A] [1f13_B]
  • SWISS-PROT database: [P00488]
  • Domain organization of [F13A_HUMAN] by SWISSPFAM
  • Domain found in 1F13: [TGc ] by SMART
  • Other resources with information on 1F13
  • Community annotation for 1F13 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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