1EXV Transferase date May 04, 2000
title Human Liver Glycogen Phosphorylase A Complexed With Glcnac A 700
authors V.L.Rath, M.Ammirati, D.E.Danley, J.L.Ekstrom, T.R.Hynes, T.V.Ols D.J.Hoover
compound source
Molecule: Liver Glycogen Phosphorylase
Chain: A, B
Ec: 2.4.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_plasmid: Pbluebacii
symmetry Space Group: P 31
R_factor 0.236 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.629 124.629 124.064 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand 700, MPD, NBG, PLP BindingDB enzyme Transferase E.C.2.4.1.1 BRENDA
related structures by homologous chain: 1FA9, 2SKE
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHuman liver glycogen phosphorylase inhibitors bind at a new allosteric site., Rath VL, Ammirati M, Danley DE, Ekstrom JL, Gibbs EM, Hynes TR, Mathiowetz AM, McPherson RK, Olson TV, Treadway JL, Hoover DJ, Chem Biol 2000 Sep;7(9):677-82. PMID:10980448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (1exv.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 1EXV
  • CSU: Contacts of Structural Units for 1EXV
  • Likely Quarternary Molecular Structure file(s) for 1EXV
  • Retrieve 1EXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EXV from S2C, [Save to disk]
  • View 1EXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EXV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EXV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1exva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1exvb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1exv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1exv_B] [1exv] [1exv_A]
  • SWISS-PROT database: [P06737]
  • Domain organization of [PYGL_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1EXV with the sequences similar proteins can be viewed for 1EXV's classification [PYGL_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PYGL_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1EXV
  • Community annotation for 1EXV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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