1FA9	Transferase	date	Jul 12, 2000
title	Human Liver Glycogen Phosphorylase A Complexed With Amp
authors	V.L.Rath, M.Ammirati, P.K.Lemotte, K.F.Fennell, M.N.Mansour, D.E. T.R.Hynes, G.K.Schulte, D.J.Wasilko, J.Pandit
compound		source
Molecule: Glycogen Phosphorylase, Liver Form Chain: A Ec: 2.4.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Liver Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk2332
symmetry	Space Group: P 31 2 1	R_factor 0.235 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.910 123.910 127.680 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	AMP, GLC, PLP, SEP	enzyme	Transferase E.C.2.4.1.1 BRENDA
related structures	by homologous chain: 1EXV, 1GPY
Gene Ontology	Chain Function Process Component A
Primary reference	Activation of human liver glycogen phosphorylase by alteration of the secondary structure and packing of the catalytic core., Rath VL, Ammirati M, LeMotte PK, Fennell KF, Mansour MN, Danley DE, Hynes TR, Schulte GK, Wasilko DJ, Pandit J, Mol Cell 2000 Jul;6(1):139-48. PMID:10949035

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (1fa9.pdb1.gz) 278 Kb LPC: Ligand-Protein Contacts for 1FA9 CSU: Contacts of Structural Units for 1FA9 Likely Quarternary Molecular Structure file(s) for 1FA9 Structure Factors (463 Kb) Retrieve 1FA9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FA9 from S2C, [Save to disk] Re-refined 1fa9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FA9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FA9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FA9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fa9a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fa9_A] [1fa9] SWISS-PROT database: [P06737] Domain organization of [PYGL_HUMAN] by SWISSPFAM

Other resources with information on 1FA9

Community annotation for 1FA9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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