1F0M Signaling Protein date May 16, 2000
title Monomeric Structure Of The Human Ephb2 Sam (Sterile Alpha Mo Domain
authors C.D.Thanos, S.Faham, K.E.Goodwill, D.Cascio, M.Phillips, J.U.Bowi
compound source
Molecule: Ephrin Type-B Receptor 2
Chain: A
Fragment: Ephb2 Receptor Fragment, Sam Domain
Synonym: Ephb2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.243 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
54.837 54.837 65.545 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1B4F, 1SGG
Primary referenceMonomeric structure of the human EphB2 sterile alpha motif domain., Thanos CD, Faham S, Goodwill KE, Cascio D, Phillips M, Bowie JU, J Biol Chem 1999 Dec 24;274(52):37301-6. PMID:10601296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (1f0m.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1F0M
  • Likely Quarternary Molecular Structure file(s) for 1F0M
  • Structure Factors (42 Kb)
  • Retrieve 1F0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F0M from S2C, [Save to disk]
  • Re-refined 1f0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F0M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F0M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f0ma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f0m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f0m] [1f0m_A]
  • SWISS-PROT database: [P29323]
  • Domain organization of [EPHB2_HUMAN] by SWISSPFAM
  • Domain found in 1F0M: [SAM ] by SMART
  • Other resources with information on 1F0M
  • Community annotation for 1F0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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