1F11	Immune System	date	May 18, 2000
title	F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
authors	F.A.Saul, B.Vulliez-Le Normand, M.Passafiume, M.M.Riottot, G.A.B
compound		source
Molecule: F124 Immunoglobulin (Kappa Light Chain) Chain: A, C Fragment: Fab Fragment (Unp P01665 Residues 1-111, P01837 R 106);		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
Molecule: F124 Immunoglobulin (Igg1 Heavy Chain) Chain: B, D Fragment: Fab Fragment (Unp Q65zr6 Residues 18-134, P01869 2-102)		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
symmetry	Space Group: C 1 2 1	R_factor 0.184 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.700 54.000 120.000 90.00 101.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
related structures	by homologous chain: 1CL7, 1FBI
Primary reference	Structure of the Fab fragment from F124, a monoclonal antibody specific for hepatitis B surface antigen., Saul FA, Vulliez-Le Normand B, Passafiume M, Riottot MM, Bentley GA, Acta Crystallogr D Biol Crystallogr 2000 Aug;56 ( Pt 8):945-51. PMID:10944330

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (1f11.pdb1.gz) 68 Kb Biological Unit Coordinates (1f11.pdb2.gz) 68 Kb CSU: Contacts of Structural Units for 1F11 Likely Quarternary Molecular Structure file(s) for 1F11 Structure Factors (137 Kb) Retrieve 1F11 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F11 from S2C, [Save to disk] Re-refined 1f11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F11 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F11

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F11, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f11a1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1f11a2, region A:108-212 [Jmol] [rasmolscript] [script source]     - Domain d1f11b1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1f11b2, region B:114-227 [Jmol] [rasmolscript] [script source]     - Domain d1f11c1, region C:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1f11c2, region C:108-212 [Jmol] [rasmolscript] [script source]     - Domain d1f11d1, region D:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1f11d2, region D:114-227 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f11_B] [1f11_A] [1f11_C] [1f11] [1f11_D] SWISS-PROT database: [P01869] [Q9D8L4] Domain organization of [IGH1M_MOUSE] [Q9D8L4_MOUSE] by SWISSPFAM Domains found in 1F11: [IG_like] [IGv ] by SMART

Other resources with information on 1F11

Community annotation for 1F11 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---