1F11 F124 FAB FRAGMENT FROM A MONOCLONAL ANTI-PRES2 ANTIBODY date
authors Saul, F.A., Normand, B.Vulliez-Le., Passafiume, M., Riottot, M.M., Bentley, G.A.
compound source
symmetry
R_factor
R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
related structures by homologous chain: 1CL7, 1FBI
Primary referenceStructure of the Fab fragment from F124, a monoclonal antibody specific for hepatitis B surface antigen., Saul FA, Vulliez-Le Normand B, Passafiume M, Riottot MM, Bentley GA, Acta Crystallogr D Biol Crystallogr 2000 Aug;56 ( Pt 8):945-51. PMID:10944330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1f11.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (1f11.pdb2.gz) 69 Kb
  • CSU: Contacts of Structural Units for 1F11
  • Likely Quarternary Molecular Structure file(s) for 1F11
  • Structure Factors (137 Kb)
  • Retrieve 1F11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F11 from S2C, [Save to disk]
  • Re-refined 1f11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F11
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F11, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f11a1, region A:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1f11a2, region A:108-212 [Jmol] [rasmolscript] [script source]
        - Domain d1f11b1, region B:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1f11b2, region B:114-227 [Jmol] [rasmolscript] [script source]
        - Domain d1f11c1, region C:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1f11c2, region C:108-212 [Jmol] [rasmolscript] [script source]
        - Domain d1f11d1, region D:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1f11d2, region D:114-227 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f11_B] [1f11_A] [1f11_C] [1f11] [1f11_D]
  • SWISS-PROT database: [P01869] [Q9D8L4]
  • Domain organization of [IGH1M_MOUSE] [Q9D8L4_MOUSE] by SWISSPFAM
  • Domains found in 1F11: [IG_like] [IGv ] by SMART
  • Other resources with information on 1F11
  • Community annotation for 1F11 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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