1F1J	Apoptosis, Hydrolase Hydrolase Inhibitor	date	May 19, 2000
title	Crystal Structure Of Caspase-7 In Complex With Acetyl-Asp-Gl Cho
authors	Y.Wei, P.S.Charifson
compound		source
Molecule: Caspase-7 Protease Chain: A, B Fragment: P20p10 Catalytic Domain Ec: 3.4.22.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ace-Asp-Glu-Val-Asp-Cho Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: This Sequence Was Chemically Synthesized
symmetry	Space Group: P 32 2 1	R_factor 0.185 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.180 88.180 186.230 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	ACE, ASJ, SO4	enzyme	Hydrolase E.C.3.4.22 BRENDA
note	1F1J (Molecule of the Month:pdb56)
related structures	by homologous chain: 1I4O, 1RHJ
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structures of caspases-1, -3, -7 and -8 reveal the basis for substrate and inhibitor selectivity., Wei Y, Fox T, Chambers SP, Sintchak J, Coll JT, Golec JM, Swenson L, Wilson KP, Charifson PS, Chem Biol 2000 Jun;7(6):423-32. PMID:10873833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (1f1j.pdb1.gz) 44 Kb Biological Unit Coordinates (1f1j.pdb2.gz) 44 Kb Biological Unit Coordinates (1f1j.pdb3.gz) 169 Kb Biological Unit Coordinates (1f1j.pdb4.gz) 85 Kb Biological Unit Coordinates (1f1j.pdb5.gz) 86 Kb LPC: Ligand-Protein Contacts for 1F1J CSU: Contacts of Structural Units for 1F1J Likely Quarternary Molecular Structure file(s) for 1F1J Retrieve 1F1J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F1J from S2C, [Save to disk]

View 1F1J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F1J

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F1J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f1ja_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f1jb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f1j] [1f1j_A] [1f1j_C] [1f1j_B] [1f1j_D] SWISS-PROT database: [P55210] Domain organization of [CASP7_HUMAN] by SWISSPFAM Domain found in 1F1J: [CASc ] by SMART

Other resources with information on 1F1J

Community annotation for 1F1J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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