1RHJ Hydrolase date Nov 14, 2003
title Crystal Structure Of The Complex Of Caspase-3 With A Pryazin Inhibitor
authors J.W.Becker, J.Rotonda, S.M.Soisson
compound source
Molecule: Caspase-3
Chain: A, C
Fragment: P17 Subunit
Synonym: Cysteine Protease Cpp32, Yama Protein, Cpp-32, Apo Casp-3, Srebp Cleavage Activity 1, Sca-1;
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp3, Cpp32
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet20b+

Molecule: Caspase-3
Chain: B, D
Fragment: P12 Subunit
Synonym: Cysteine Protease Cpp32, Yama Protein, Cpp-32, Apo Casp-3, Srebp Cleavage Activity 1, Sca-1;
Ec: 3.4.22.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp3, Cpp32
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.187 68.764 93.008 90.00 101.46 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PZN enzyme Hydrolase E.C.3.4.22 BRENDA
related structures by homologous chain: 1CP3, 1F1J, 1QX3
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceReducing the peptidyl features of caspase-3 inhibitors: a structural analysis., Becker JW, Rotonda J, Soisson SM, Aspiotis R, Bayly C, Francoeur S, Gallant M, Garcia-Calvo M, Giroux A, Grimm E, Han Y, McKay D, Nicholson DW, Peterson E, Renaud J, Roy S, Thornberry N, Zamboni R, J Med Chem 2004 May 6;47(10):2466-74. PMID:15115390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1rhj.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1RHJ
  • CSU: Contacts of Structural Units for 1RHJ
  • Likely Quarternary Molecular Structure file(s) for 1RHJ
  • Structure Factors (226 Kb)
  • Retrieve 1RHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RHJ from S2C, [Save to disk]
  • Re-refined 1rhj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RHJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RHJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rhj.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1rhj.2, region C:,D [Jmol] [rasmolscript] [script source]
  • Fold representative 1rhj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rhj_C] [1rhj_A] [1rhj_B] [1rhj] [1rhj_D]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 1RHJ: [CASc ] by SMART
  • Other resources with information on 1RHJ
  • Community annotation for 1RHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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