1F4J Oxidoreductase date Jun 07, 2000
title Structure Of Tetragonal Crystals Of Human Erythrocyte Catalase
authors M.K.Safo, F.N.Musayev, S.H.Wu, D.J.Abraham, T.P.Ko
compound source
Molecule: Catalase
Chain: A, B, C, D
Fragment: Intact But Lacks The First And Last Exons
Ec: 1.11.1.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Erythrocyte
symmetry Space Group: I 41
R_factor 0.196 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
203.600 203.600 144.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand HEM enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
related structures by homologous chain: 4BLC, 8CAT
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of tetragonal crystals of human erythrocyte catalase., Safo MK, Musayev FN, Wu SH, Abraham DJ, Ko TP, Acta Crystallogr D Biol Crystallogr 2001 Jan;57(Pt 1):1-7. PMID:11134921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk]
  • Biological Unit Coordinates (1f4j.pdb1.gz) 336 Kb
  • LPC: Ligand-Protein Contacts for 1F4J
  • CSU: Contacts of Structural Units for 1F4J
  • Likely Quarternary Molecular Structure file(s) for 1F4J
  • Structure Factors (1201 Kb)
  • Retrieve 1F4J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F4J from S2C, [Save to disk]
  • Re-refined 1f4j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F4J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F4J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F4J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f4ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f4jb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1f4jc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1f4jd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1f4j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f4j_B] [1f4j] [1f4j_C] [1f4j_A] [1f4j_D]
  • SWISS-PROT database: [P04040]
  • Domain organization of [CATA_HUMAN] by SWISSPFAM
  • Domain found in 1F4J: [Catalase ] by SMART
  • Other resources with information on 1F4J
  • Community annotation for 1F4J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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