4BLC Oxidoreductase date Sep 27, 1998
title The Structure Of Orthorhombic Crystals Of Beef Liver Catalas
authors T.P.Ko, J.Day, A.Malkin, A.Mcpherson
compound source
Molecule: Protein (Catalase)
Chain: A, B, C, D
Ec: 1.11.1.6
Other_details: Each Subunit Contains A Heme And An Nadp
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Liver
Other_details: Purchased From Sigma Chemical Co., St.Louis,
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.800 140.600 232.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand HEM, NDP enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
related structures by homologous chain: 1DGB, 1F4J
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • catalase activity
  • peroxidase activity


  • Primary referenceStructure of orthorhombic crystals of beef liver catalase., Ko TP, Day J, Malkin AJ, McPherson A, Acta Crystallogr D Biol Crystallogr 1999 Aug;55 ( Pt 8):1383-94. PMID:10417406
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (4blc.pdb1.gz) 338 Kb
  • LPC: Ligand-Protein Contacts for 4BLC
  • CSU: Contacts of Structural Units for 4BLC
  • Likely Quarternary Molecular Structure file(s) for 4BLC
  • Retrieve 4BLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BLC from S2C, [Save to disk]
  • View 4BLC in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 4BLC
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BLC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4blca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d4blcb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d4blcc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d4blcd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 4blc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4blc_D] [4blc] [4blc_B] [4blc_C] [4blc_A]
  • SWISS-PROT database: [P00432]
  • Domain organization of [CATA_BOVIN] by SWISSPFAM
  • Domain found in 4BLC: [Catalase ] by SMART
  • Other resources with information on 4BLC
  • Community annotation for 4BLC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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