1F62 Transcription date Jun 19, 2000
title Wstf-Phd
authors J.Pascual, M.Martinez-Yamout, H.J.Dyson, P.E.Wright
compound source
Molecule: Transcription Factor Wstf
Chain: A
Fragment: Phd Zinc Finger
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1MM3
Primary referenceStructure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor., Pascual J, Martinez-Yamout M, Dyson HJ, Wright PE, J Mol Biol 2000 Dec 15;304(5):723-9. PMID:11124022
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (1f62.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1F62
  • CSU: Contacts of Structural Units for 1F62
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1F62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F62 from S2C, [Save to disk]
  • View 1F62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F62
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F62, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f62a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f62] [1f62_A]
  • SWISS-PROT database: [Q9UIG0]
  • Domain organization of [BAZ1B_HUMAN] by SWISSPFAM
  • Domains found in 1F62: [PHD] [RING ] by SMART
  • Other resources with information on 1F62
  • Community annotation for 1F62 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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