1MM3 Dna Binding Protein Transcription date Sep 02, 2002
title Solution Structure Of The 2nd Phd Domain From Mi2b With C-Te Loop Replaced By Corresponding Loop From Wstf
authors A.H.Y.Kwan, D.A.Gell, A.Verger, M.Crossley, J.M.Matthews, J.P.Mac
compound source
Molecule: Mi2-Beta(Chromodomain Helicase-Dna-Binding Protei Transcription Factor Wstf;
Chain: A
Fragment: Residues 1-61
Engineered: Yes
Other_details: The C-Terminal Loop (Residue 37-49) Was Repl Corresponding Loop From Wstf.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chd4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1F62, 1MM2

Primary referenceEngineering a protein scaffold from a PHD finger., Kwan AH, Gell DA, Verger A, Crossley M, Matthews JM, Mackay JP, Structure (Camb) 2003 Jul;11(7):803-13. PMID:12842043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (1mm3.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1MM3
  • CSU: Contacts of Structural Units for 1MM3
  • Original NMR restraints for 1MM3 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1MM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MM3 from S2C, [Save to disk]
  • View 1MM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MM3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MM3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mm3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mm3_A] [1mm3]
  • SWISS-PROT database: [Q14839]
  • Domain organization of [CHD4_HUMAN] by SWISSPFAM
  • Domain found in 1MM3: [PHD ] by SMART
  • Other resources with information on 1MM3
  • Community annotation for 1MM3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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