1MM2 Solution structure of the 2nd PHD domain from Mi2b date
authors Kwan, A.H.Y., Gell, D.A., Verger, A., Crossley, M., Matthews, J.M., Mackay, J.P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand ZN enzyme
related structures by homologous chain: 1MM3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering a protein scaffold from a PHD finger., Kwan AH, Gell DA, Verger A, Crossley M, Matthews JM, Mackay JP, Structure (Camb) 2003 Jul;11(7):803-13. PMID:12842043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (1mm2.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1MM2
  • CSU: Contacts of Structural Units for 1MM2
  • Original NMR restraints for 1MM2 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1MM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MM2 from S2C, [Save to disk]
    • View 1MM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MM2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MM2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mm2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mm2] [1mm2_A]
  • SWISS-PROT database: [Q14839]
  • Domain organization of [CHD4_HUMAN] by SWISSPFAM
  • Domain found in 1MM2: [PHD ] by SMART
    • Other resources with information on 1MM2
  • Community annotation for 1MM2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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