1FD0	Gene Regulation	date	Jul 19, 2000
title	Isotype Selectivity Of The Human Retinoic Acid Nuclear Recep The Complex With The Rargamma-Selective Retinoid Sr11254
authors	B.P.Klaholz, D.Moras, Structural Proteomics In Europe (Spine)
compound		source
Molecule: Retinoic Acid Receptor Gamma-1 Chain: A Fragment: Ligand Binding Domain Synonym: Rar-Gamma-1 Engineered: Yes Other_details: Complexed With Sr11254, Residue 254		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 41 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.789 59.789 155.688 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.38 Å
ligand	254, LMU	enzyme
related structures	by homologous chain: 1FCY, 1FCZ
Gene Ontology	Chain Function Process Component A
Primary reference	C-H...O hydrogen bonds in the nuclear receptor RARgamma--a potential tool for drug selectivity., Klaholz B, Moras D, Structure (Camb) 2002 Sep;10(9):1197-204. PMID:12220491

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (1fd0.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 1FD0 CSU: Contacts of Structural Units for 1FD0 Likely Quarternary Molecular Structure file(s) for 1FD0 Structure Factors (603 Kb) Retrieve 1FD0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FD0 from S2C, [Save to disk] Re-refined 1fd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FD0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FD0

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1FD0 from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FD0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fd0a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fd0_A] [1fd0] SWISS-PROT database: [P13631] Domain organization of [RARG_HUMAN] by SWISSPFAM Domain found in 1FD0: [HOLI ] by SMART

Other resources with information on 1FD0

Community annotation for 1FD0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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