1FHB THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE CYANIDE ADDUCT OF A MET80ALA VARIANT OF SACCHAROMYCES CEREVISIAE ISO-1-CYTOCHROME C. IDENTIFICATION OF LIGAND-RESIDUE INTERACTIONS IN THE DISTAL HEME CAVITY date
authors Banci, L., Bertini, I., Bren, K.L., Gray, H.B., Sompornpisut, P., Turano, P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 17 Modelsresolution
ligand CYN, HEM, M3L enzyme
related structures by homologous chain: 1KYO, 1YFC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional solution structure of the cyanide adduct of a Met80Ala variant of Saccharomyces cerevisiae iso-1-cytochrome c. Identification of ligand-residue interactions in the distal heme cavity., Banci L, Bertini I, Bren KL, Gray HB, Sompornpisut P, Turano P, Biochemistry 1995 Sep 12;34(36):11385-98. PMID:7547866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (1fhb.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1FHB
  • CSU: Contacts of Structural Units for 1FHB
  • Retrieve 1FHB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FHB from S2C, [Save to disk]
    • View 1FHB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FHB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FHB, from MSDmotif at EBI
  • Genome occurence of 1FHB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fhb__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1fhb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fhb] [1fhb_A]
  • SWISS-PROT database: [P00044]
  • Domain organization of [CYC1_YEAST] by SWISSPFAM
    • Other resources with information on 1FHB
  • Community annotation for 1FHB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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